To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. EGRET reconstructs genotype-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
Variable description
You can either download all the networks to get a matrix of size the number of samples by the number of edges. The number of edges is the number of TFs/miRNA * number of genes (~ 106). Otherwise, you can specify the sample network to download and you will get a TF-by-gene matrix named after the GTEx sample reference.
| Sample | Subject | Gender | Age | DTH-HRDY | SMAT-SSCR | SMRIN | SMTS | SMUBRID | SMTSISCH | SMTSTPTREF |
|---|---|---|---|---|---|---|---|---|---|---|
| GTEX-1122O-0003-SM-5Q5DL | 10.0 | Blood | EFO_0000572 | 1363.0 | ||||||
| GTEX-1122O-0003-SM-5Q5DL | GTEX-1122O | 2.0 | 60-69 | 0.0 | Actual Death | |||||
| GTEX-11EM3-0001-SM-5Q5BD | 10.0 | Blood | EFO_0000572 | 1143.0 | ||||||
| GTEX-11EM3-0001-SM-5Q5BD | GTEX-11EM3 | 2.0 | 20-29 | 0.0 | Actual Death | |||||
| GTEX-11EMC-0002-SM-5Q5DO | 10.0 | Blood | EFO_0000572 | 635.0 | ||||||
| GTEX-11EMC-0002-SM-5Q5DO | GTEX-11EMC | 2.0 | 60-69 | 2.0 | Actual Death | |||||
| GTEX-11EQ9-0002-SM-5QGQ1 | 10.0 | Blood | EFO_0000572 | -165.0 | ||||||
| GTEX-11EQ9-0002-SM-5QGQ1 | GTEX-11EQ9 | 1.0 | 30-39 | 2.0 | Actual Death | |||||
| GTEX-11I78-0001-SM-5Q5BE | 9.9 | Blood | EFO_0000572 | -86.0 | ||||||
| GTEX-11I78-0001-SM-5Q5BE | GTEX-11I78 | 2.0 | 50-59 | 0.0 | Actual Death |