Cell lines

The cell line resource includes 1,376 sample-specific gene regulatory networks for TF regulation derived from CCLE data, 6 aggregate networks, and 359 genotype-specific networks in normal human cell lines modeling miRNA and TF regulation from GTEx data, and an aggregate miRNA network across all CCLE cell lines.

Click on the bar plot to filter the table below.

Bubble size reflects the number of regulators (TFs/miRNA) in the network. Click on the bubble plot to filter the table below.

Number Tissue type Methods Regulator Condition Network types Datasets
1 All DRAGON miRNA Cancer aggregate CCLE
2 Fibroblast PANDA, PUMA TF, miRNA Normal (primary) aggregate GTEx
3 LCL PANDA, PUMA, EGRET TF, miRNA Normal (transformed) aggregate GTEx
4 Adrenal Cancer LIONESS TF Cancer single-sample CCLE
5 Bile Duct Cancer LIONESS TF Cancer single-sample CCLE
6 Bladder Cancer LIONESS TF Cancer single-sample CCLE
7 Bone Cancer LIONESS TF Cancer single-sample CCLE
8 Brain Cancer LIONESS TF Cancer single-sample CCLE
9 Breast Cancer LIONESS TF Cancer single-sample CCLE
10 Cervical Cancer LIONESS TF Cancer single-sample CCLE
11 Colon/Colorectal Cancer LIONESS TF Cancer single-sample CCLE
12 Embryonal Cancer LIONESS TF Cancer single-sample CCLE
13 Endometrial/Uterine Cancer LIONESS TF Cancer single-sample CCLE
14 Engineered LIONESS TF Cancer single-sample CCLE
15 Esophageal Cancer LIONESS TF Cancer single-sample CCLE
16 Eye Cancer LIONESS TF Cancer single-sample CCLE
17 Fibroblast LIONESS TF Cancer single-sample CCLE
18 Gallbladder Cancer LIONESS TF Cancer single-sample CCLE
19 Gastric Cancer LIONESS TF Cancer single-sample CCLE
20 Head and Neck Cancer LIONESS TF Cancer single-sample CCLE
21 Kidney Cancer LIONESS TF Cancer single-sample CCLE
22 Leukemia LIONESS TF Cancer single-sample CCLE
23 Liposarcoma LIONESS TF Cancer single-sample CCLE
24 Liver Cancer LIONESS TF Cancer single-sample CCLE
25 Lung Cancer LIONESS TF Cancer single-sample CCLE
26 Lymphoma LIONESS TF Cancer single-sample CCLE
27 Myeloma LIONESS TF Cancer single-sample CCLE
28 Neuroblastoma LIONESS TF Cancer single-sample CCLE
29 Ovarian Cancer LIONESS TF Cancer single-sample CCLE
30 Pancreatic Cancer LIONESS TF Cancer single-sample CCLE
31 Prostate Cancer LIONESS TF Cancer single-sample CCLE
32 Rhabdoid LIONESS TF Cancer single-sample CCLE
33 Sarcoma LIONESS TF Cancer single-sample CCLE
34 Skin Cancer LIONESS TF Cancer single-sample CCLE
35 Teratoma LIONESS TF Cancer single-sample CCLE
36 Thyroid Cancer LIONESS TF Cancer single-sample CCLE
37 IPSC EGRET, PANDA TF Normal aggregate Banovich et al.
38 IPSC-Cardiomyocyte EGRET, PANDA TF Normal aggregate Banovich et al.
39 K562 EGRET TF Normal aggregate ENCODE
40 GM12878 EGRET TF Normal aggregate ENCODE