CESC cancer networks

Data sets 1 Networks Aggregate 1

To get the full list of phenotypic variables, please check the menu below.

Tool description

Like PANDA, OTTER reconstructs a gene regulatory network from the TF PPI, TF DNA binding motif, and gene expression samples. OTTER formulates network inference as a well-defined objective function that optimizes the graph matching of the three network priors. Check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.
The variable Samples indicates the number of samples used for network reconstruction. For single-sample networks, clicking the number of samples links to the phenotypic variable table and the individual networks. The number in the Sample variable and the phenotypic variable table may be different because the table can include samples from other studies. For example, in colon cancer, 444 TCGA samples were used to build LIONESS networks in a first study and 445 samples were used for a more recent study. The superset of both TCGA samples is comprised of 487 samples, which is the size of the pheotypic variables table. This discrepancy is due to different pre-processinng techniques, inclusion/exclusion criteria, and sample quality-control.

Variable description

This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

Sample
 Gender Race Ethnicity Weight
 Height
 Anatomic location
 Stage
 Diagnosis Vital status Time
 Age
 Network
Network format
TCGA-EK-A2R9-01A-11R-A18M-07 female white not hispanic or latino 185 162 Cervix not reported c53.9 alive NA 58
TCGA-C5-A2LV-01A-11R-A18M-07 female black or african american not hispanic or latino 84 165 Cervix not reported c53.9 alive NA 36
TCGA-C5-A902-01A-11R-A37O-07 female black or african american not hispanic or latino 83 177 Cervix not reported c53.9 alive NA 35
TCGA-VS-A9V2-01A-11R-A42T-07 female white not reported 49 156 Cervix not reported c53.9 alive NA 29
TCGA-C5-A1BL-01A-11R-A13Y-07 female white not hispanic or latino 78 168 Cervix not reported c53.9 alive NA 32
TCGA-VS-A8EH-01A-11R-A36F-07 female not reported not reported 44 157 Cervix not reported c53.9 alive NA 56
TCGA-EK-A2PK-01A-11R-A18M-07 female white not hispanic or latino 94 167 Cervix not reported c53.9 alive NA 43
TCGA-C5-A3HF-01A-11R-A213-07 female white not hispanic or latino NA NA Cervix not reported c53.9 dead 543 24
TCGA-EK-A2PM-01A-11R-A18M-07 female white not reported 51 157 Cervix not reported c53.9 alive NA 81
TCGA-C5-A1MP-01A-11R-A14Y-07 female black or african american not hispanic or latino NA NA Cervix not reported c53.9 alive NA 34
TCGA-C5-A3HL-01A-11R-A213-07 female white not hispanic or latino NA NA Cervix not reported c53.9 alive NA 76
TCGA-ZJ-AAXF-01A-31R-A42T-07 female not reported not reported NA NA Cervix not reported c53.9 alive NA 62
TCGA-JW-A5VG-01A-11R-A28H-07 female american indian or alaska native hispanic or latino 110 158 Cervix not reported c53.9 alive NA 35
TCGA-EA-A5ZF-01A-11R-A28H-07 female asian not hispanic or latino 51 151 Cervix not reported c53.9 alive NA 56
TCGA-R2-A69V-01A-11R-A32P-07 female white not hispanic or latino 116 157 Cervix not reported c53.9 alive NA 42
TCGA-VS-A94Y-01A-11R-A38B-07 female white not reported 44 154 Cervix not reported c53.9 dead 144 47
TCGA-UC-A7PD-01A-11R-A352-07 female american indian or alaska native not reported NA NA Cervix not reported c53.9 dead 355 21
TCGA-C5-A1M5-01A-11R-A13Y-07 female white not hispanic or latino 70 NA Cervix not reported c53.9 dead 2052 53
TCGA-C5-A1M8-01A-21R-A13Y-07 female white not hispanic or latino 75 163 Cervix not reported c53.9 alive NA 43
TCGA-C5-A3HD-01B-11R-A213-07 female white not hispanic or latino 83 170 Cervix not reported c53.9 alive NA 51
TCGA-FU-A770-01A-11R-A33Z-07 female white not hispanic or latino 67 175 Cervix not reported c53.9 alive NA 33
TCGA-LP-A5U3-01A-11R-A28H-07 female asian not hispanic or latino 50 160 Cervix not reported c53.9 alive NA 40
TCGA-ZJ-AAX4-01A-11R-A42T-07 female white not hispanic or latino 77 170 Cervix not reported c53.9 alive NA 85
TCGA-UC-A7PF-01A-11R-A352-07 female not reported not reported 210 NA Cervix not reported c53.9 dead 2859 44
TCGA-C5-A0TN-01A-21R-A14Y-07 female black or african american not hispanic or latino 55 NA Cervix not reported c53.9 dead 348 21
TCGA-EA-A5O9-01A-11R-A28H-07 female white not hispanic or latino 99 160 Cervix not reported c53.1 alive NA 39
TCGA-VS-AA62-01A-11R-A42T-07 female white not reported 67 156 Cervix not reported c53.9 dead 469 51
TCGA-C5-A8XH-01A-11R-A37O-07 female white not hispanic or latino 60 163 Cervix not reported c53.9 dead 1394 39
TCGA-C5-A2LS-01A-22R-A22U-07 female white not hispanic or latino 92 173 Cervix not reported c53.9 alive NA 37
TCGA-VS-A8QA-01A-11R-A37O-07 female not reported not reported 67 160 Cervix not reported c53.9 alive NA 44
TCGA-JW-AAVH-01A-11R-A38B-07 female white hispanic or latino 165 155 Cervix not reported c53.9 alive NA 46
TCGA-C5-A7CK-01A-11R-A32P-07 female white not reported 55 165 Cervix not reported c53.9 dead 4086 58
TCGA-VS-A9V3-01A-11R-A42T-07 female white not reported 60 164 Cervix not reported c53.9 alive NA 62
TCGA-MU-A8JM-01A-11R-A36F-07 female white not hispanic or latino 86 165 Cervix not reported c53.9 alive NA 46
TCGA-EX-A8YF-01A-11R-A37O-07 female white not reported 57 168 Cervix not reported c53.9 alive NA 44
TCGA-EX-A69M-01A-11R-A32P-07 female white not reported 58 158 Cervix not reported c53.9 dead 253 62
TCGA-LP-A5U2-01A-11R-A28H-07 female asian not hispanic or latino 51 160 Cervix not reported c53.9 alive NA 30
TCGA-EX-A1H6-01B-11R-A22U-07 female white not reported 74 158 Cervix not reported c53.9 alive NA 38
TCGA-JX-A3Q0-01A-11R-A32Y-07 female black or african american not hispanic or latino 57 166 Cervix not reported c53.9 alive NA 63
TCGA-VS-A8QF-01A-21R-A37O-07 female white not reported 68 159 Cervix not reported c53.9 alive NA 42
TCGA-C5-A1MJ-01A-11R-A14Y-07 female white not reported 75 165 Cervix not reported c53.9 dead 14 61
TCGA-VS-A94X-01A-11R-A38B-07 female black or african american not reported 42 158 Cervix not reported c53.9 dead 506 40
TCGA-C5-A1BF-01B-11R-A13Y-07 female white not reported 76 NA Cervix not reported c53.9 dead 570 46
TCGA-VS-A8QM-01A-11R-A37O-07 female not reported not reported 53 163 Cervix not reported c53.9 dead 951 47
TCGA-C5-A1MN-01A-11R-A14Y-07 female white not hispanic or latino 64 165 Cervix not reported c53.9 dead 1245 42
TCGA-DS-A1OB-01A-11R-A14Y-07 female white not hispanic or latino 72 152 Cervix not reported c53.9 dead 861 45
TCGA-C5-A1BE-01B-11R-A13Y-07 female white not reported 76 149 Cervix not reported c53.9 dead 2094 64
TCGA-VS-A9UQ-01A-21R-A42T-07 female not reported not reported 72 160 Cervix not reported c53.9 alive NA 32
TCGA-VS-A8EB-01A-11R-A36F-07 female white not reported 64 153 Cervix not reported c53.9 dead 305 41
TCGA-EA-A556-01A-11R-A26T-07 female white not hispanic or latino 62 160 Cervix not reported c53.9 alive NA 38
TCGA-DG-A2KL-01A-11R-A180-07 female not reported not reported 75 155 Cervix not reported c53.9 alive NA 53
TCGA-VS-A8EJ-01A-11R-A37O-07 female white not reported 113 167 Cervix not reported c53.9 dead 607 60
TCGA-MA-AA3Y-01A-11R-A38B-07 female white hispanic or latino 65 156 Cervix not reported c53.9 alive NA 48
TCGA-VS-A94W-01A-12R-A37O-07 female white not reported 79 156 Cervix not reported c53.9 alive NA 39
TCGA-C5-A1MH-01A-11R-A14Y-07 female white not hispanic or latino NA NA Cervix not reported c53.9 dead 1186 71
TCGA-LP-A4AX-01A-12R-A24H-07 female asian not hispanic or latino NA NA Cervix not reported c53.9 alive NA 45
TCGA-EA-A43B-01A-81R-A32Y-07 female white not hispanic or latino 72 164 Cervix not reported c53.9 alive NA 43
TCGA-C5-A8ZZ-01A-11R-A37O-07 female white not hispanic or latino NA NA Cervix not reported c53.9 alive NA 41
TCGA-JX-A3Q8-01A-11R-A21T-07 female asian not hispanic or latino 68 158 Cervix not reported c53.9 alive NA 40
TCGA-EA-A5ZD-01A-11R-A28H-07 female asian not hispanic or latino 47 154 Cervix not reported c53.9 alive NA 40
TCGA-DR-A0ZL-01A-11R-A10U-07 female asian not hispanic or latino 57 155 Cervix not reported c53.9 alive NA 53
TCGA-C5-A1ML-01A-11R-A14Y-07 female white not reported 120 NA Cervix not reported c53.9 dead 636 49
TCGA-BI-A0VS-01A-11R-A10U-07 female white not hispanic or latino NA NA Cervix not reported c53.9 alive NA 48
TCGA-BI-A0VR-01A-11R-A10U-07 female white not hispanic or latino NA NA Cervix not reported c53.9 alive NA 53
TCGA-Q1-A73P-01A-11R-A32P-07 female white not hispanic or latino 82 173 Cervix not reported c53.9 alive NA 45
TCGA-EA-A3Y4-01A-51R-A24H-07 female white not hispanic or latino 99 167 Cervix not reported c53.9 alive NA 40
TCGA-EA-A3HT-01A-61R-A21T-07 female white not hispanic or latino 83 163 Cervix not reported c53.9 alive NA 68
TCGA-VS-A950-01A-11R-A42T-07 female not reported not reported 57 165 Cervix not reported c53.9 alive NA 42
TCGA-JX-A3PZ-01A-11R-A32Y-07 female white not reported 58 175 Cervix not reported c53.9 dead 642 25
TCGA-EA-A439-01A-11R-A24H-07 female asian not hispanic or latino 47 160 Cervix not reported c53.9 alive NA 50
TCGA-ZJ-AAXI-01A-11R-A42T-07 female not reported not reported NA NA Cervix not reported c53.9 alive NA 67
TCGA-EK-A2PL-01A-11R-A18M-07 female white not reported 113 167 Cervix not reported c53.9 alive NA 36
TCGA-Q1-A6DT-01A-11R-A32P-07 female white not hispanic or latino NA NA Cervix not reported c53.9 dead 275 55
TCGA-DS-A1OA-01A-11R-A14Y-07 female asian not hispanic or latino 51 160 Cervix not reported c53.9 dead 879 77
TCGA-ZX-AA5X-01A-11R-A42T-07 female white not hispanic or latino 56 157 Cervix not reported c53.9 alive NA 64
TCGA-VS-A9UU-01A-11R-A42T-07 female not reported not reported 67 162 Cervix not reported c53.9 alive NA 42
TCGA-WL-A834-01A-11R-A352-07 female white not hispanic or latino 79 162 Cervix not reported c53.9 alive NA 57
TCGA-VS-A9UO-01A-11R-A42T-07 female white not reported 40 159 Cervix not reported c53.9 alive NA 43
TCGA-C5-A7X3-01A-11R-A352-07 female white not hispanic or latino 79 160 Cervix not reported c53.9 dead 284 70
TCGA-MY-A5BF-01A-11R-A26T-07 female white not hispanic or latino 74 170 Cervix not reported c53.9 alive NA 68
TCGA-C5-A1MF-01A-11R-A13Y-07 female white not hispanic or latino 70 163 Cervix not reported c53.9 alive NA 49
TCGA-EK-A2PG-01A-11R-A18M-07 female black or african american not reported 55 155 Cervix not reported c53.9 alive NA 88
TCGA-UC-A7PG-01A-11R-A42S-07 female white not reported 82 NA Cervix not reported c53.9 dead 370 44
TCGA-UC-A7PG-06A-11R-A42S-07 female white not reported 82 NA Cervix not reported c53.9 dead 370 44
TCGA-4J-AA1J-01A-21R-A38B-07 female white not hispanic or latino 48 165 Cervix not reported c53.9 alive NA 31
TCGA-JW-A5VI-01A-11R-A28H-07 female american indian or alaska native hispanic or latino 59 158 Cervix not reported c53.9 alive NA 45
TCGA-PN-A8MA-01A-11R-A36F-07 female black or african american not hispanic or latino 71 167 Cervix not reported c53.9 alive NA 43
TCGA-C5-A7X8-01A-11R-A36F-07 female white not hispanic or latino 74 170 Cervix not reported c53.9 alive NA 35
TCGA-VS-A8Q9-01A-12R-A37O-07 female white not reported 49 150 Cervix not reported c53.9 alive NA 79
TCGA-IR-A3LC-01A-11R-A213-07 female white not reported 64 160 Cervix not reported c53.9 alive NA 40
TCGA-ZJ-AAXT-01A-11R-A42T-07 female white not hispanic or latino 76 165 Cervix not reported c53.9 alive NA 54
TCGA-2W-A8YY-01A-11R-A37O-07 female white not hispanic or latino 42 160 Cervix not reported c53.9 alive NA 51
TCGA-C5-A7UC-01A-11R-A352-07 female white not reported NA NA Cervix not reported c53.9 dead 523 48
TCGA-Q1-A73Q-01A-21R-A32P-07 female white not hispanic or latino 87 158 Cervix not reported c53.9 alive NA 46
TCGA-Q1-A6DW-01A-11R-A32P-07 female white not hispanic or latino 62 160 Cervix not reported c53.9 alive NA 44
TCGA-EA-A5ZE-01A-11R-A28H-07 female asian not hispanic or latino 55 153 Cervix not reported c53.9 alive NA 54
TCGA-MU-A5YI-01A-11R-A32P-07 female black or african american not hispanic or latino 101 175 Cervix not reported c53.9 alive NA 60
TCGA-DS-A0VK-01A-21R-A10U-07 female white not hispanic or latino 52 165 Cervix not reported c53.9 dead 1118 45
TCGA-ZJ-AAXN-01A-11R-A42T-07 female white not hispanic or latino 59 173 Cervix not reported c53.9 alive NA 34
TCGA-VS-A9UD-01A-11R-A42T-07 female white not reported 64 161 Cervix not reported c53.9 alive NA 73
TCGA-EK-A2RL-01A-11R-A18M-07 female black or african american not hispanic or latino 89 154 Cervix not reported c53.9 dead 1453 32
TCGA-DG-A2KH-01A-21R-A22U-07 female not reported not reported NA NA Cervix not reported c53.9 alive NA 25
TCGA-EA-A3HR-01A-11R-A213-07 female white not hispanic or latino 86 146 Cervix not reported c53.9 alive NA 57
TCGA-DS-A3LQ-01A-21R-A21T-07 female not reported not reported 72 163 Cervix not reported c53.9 alive NA 46
TCGA-FU-A40J-01A-11R-A24H-07 female white not hispanic or latino 78 160 Cervix not reported c53.9 alive NA 38
TCGA-IR-A3L7-01A-21R-A213-07 female white not reported 89 177 Cervix not reported c53.9 alive NA 37
TCGA-GH-A9DA-01A-21R-A37O-07 female white not hispanic or latino NA 170 Cervix not reported c53.9 alive NA 27
TCGA-FU-A3HY-01A-11R-A21T-07 female white not hispanic or latino 74 170 Cervix not reported c53.9 alive NA 47
TCGA-JW-A5VH-01A-11R-A28H-07 female american indian or alaska native hispanic or latino 80 163 Cervix not reported c53.9 dead 100 53
TCGA-VS-A9UZ-01A-11R-A42T-07 female white not reported 54 149 Cervix not reported c53.9 alive NA 61
TCGA-FU-A3WB-01A-11R-A22U-07 female white not hispanic or latino 89 167 Cervix not reported c53.9 alive NA 43
TCGA-EK-A2H1-01A-11R-A180-07 female white not reported 62 160 Cervix not reported c53.9 alive NA 20
TCGA-VS-A9UH-01A-11R-A42T-07 female black or african american not reported NA NA Cervix not reported c53.9 alive NA 53
TCGA-VS-A94Z-01A-11R-A38B-07 female white not reported 96 162 Cervix not reported c53.9 alive NA 38
TCGA-EA-A50E-01A-21R-A26T-07 female asian not hispanic or latino 45 152 Cervix not reported c53.9 dead 227 45
TCGA-ZJ-AAXJ-01A-11R-A42T-07 female not reported not reported NA NA Cervix not reported c53.9 alive NA 43
TCGA-EX-A1H5-01A-31R-A13Y-07 female black or african american not hispanic or latino 67 167 Cervix not reported c53.9 alive NA 58
TCGA-HM-A4S6-01A-11R-A26T-07 female white not hispanic or latino 101 152 Cervix not reported c53.9 alive NA 51
TCGA-EA-A3HQ-01A-11R-A213-07 female white not hispanic or latino 88 160 Cervix not reported c53.9 alive NA 60
TCGA-VS-A8Q8-01A-11R-A37O-07 female white not reported 92 166 Cervix not reported c53.9 dead 978 26
TCGA-VS-A9U7-01A-11R-A42T-07 female white not reported 82 157 Cervix not reported c53.9 alive NA 30
TCGA-EX-A69L-01A-11R-A32P-07 female asian not hispanic or latino 73 163 Cervix not reported c53.9 alive NA 41
TCGA-FU-A3YQ-01A-11R-A22U-07 female white not hispanic or latino 101 160 Cervix not reported c53.9 alive NA 35
TCGA-EA-A1QS-01A-61R-A22U-07 female white not hispanic or latino 60 164 Cervix not reported c53.9 alive NA 46
TCGA-FU-A3HZ-01A-11R-A213-07 female white not hispanic or latino 66 165 Cervix not reported c53.9 alive NA 64
TCGA-LP-A7HU-01A-11R-A33Z-07 female asian not hispanic or latino 58 155 Cervix not reported c53.9 alive NA 53
TCGA-FU-A3TQ-01A-11R-A22U-07 female white not hispanic or latino 59 152 Cervix not reported c53.9 alive NA 55
TCGA-Q1-A5R3-01A-11R-A28H-07 female white not hispanic or latino 50 162 Cervix not reported c53.9 alive NA 56
TCGA-DR-A0ZM-01A-12R-A10U-07 female white not hispanic or latino 64 158 Cervix not reported c53.9 alive NA 61
TCGA-LP-A4AW-01A-11R-A24H-07 female asian not hispanic or latino 52 158 Cervix not reported c53.9 alive NA 52
TCGA-EA-A3HS-01A-11R-A213-07 female white not hispanic or latino 54 169 Cervix not reported c53.9 alive NA 35
TCGA-IR-A3LI-01A-11R-A32Y-07 female white not reported 71 169 Cervix not reported c53.9 alive NA 48
TCGA-EK-A2IP-01A-11R-A180-07 female white not reported 69 167 Cervix not reported c53.9 alive NA 28
TCGA-VS-A9V4-01A-12R-A42T-07 female white not reported 52 161 Cervix not reported c53.9 dead 132 63
TCGA-C5-A2M2-01A-21R-A18M-07 female white not hispanic or latino NA NA Cervix not reported c53.9 dead 1011 56
TCGA-MU-A51Y-01A-11R-A26T-07 female white not reported 31 NA Cervix not reported c53.9 alive NA 27
TCGA-IR-A3LF-01A-21R-A22U-07 female white not reported 86 155 Cervix not reported c53.9 alive NA 64
TCGA-VS-A9UJ-01A-11R-A42T-07 female not reported not reported NA NA Cervix not reported c53.9 dead 52 55
TCGA-C5-A1BJ-01A-11R-A13Y-07 female white not reported 49 169 Cervix not reported c53.9 alive NA 34
TCGA-EA-A78R-01A-11R-A32P-07 female asian not hispanic or latino 63 160 Cervix not reported c53.9 alive NA 54
TCGA-VS-A9UL-01A-11R-A42T-07 female white not reported 56 149 Cervix not reported c53.9 dead 442 79
TCGA-VS-A8EI-01A-11R-A37O-07 female white not reported 58 158 Cervix not reported c53.9 alive NA 38
TCGA-EA-A410-01A-11R-A32Y-07 female white not hispanic or latino 80 160 Cervix not reported c53.9 alive NA 51
TCGA-IR-A3LA-01A-11R-A22U-07 female white not reported 101 157 Cervix not reported c53.9 alive NA 60
TCGA-IR-A3LL-01A-11R-A213-07 female white not reported 92 157 Cervix not reported c53.9 alive NA 60
TCGA-HM-A3JK-01A-11R-A32Y-07 female white not hispanic or latino 94 165 Cervix not reported c53.9 alive NA 64
TCGA-DG-A2KJ-01A-11R-A32Y-07 female not reported not reported NA NA Cervix not reported c53.9 alive NA 50
TCGA-JW-A852-01A-11R-A352-07 female white hispanic or latino 100 160 Cervix not reported c53.9 dead 252 42
TCGA-C5-A1BK-01B-11R-A13Y-07 female black or african american not hispanic or latino 82 151 Cervix not reported c53.9 alive NA 36
TCGA-C5-A1BM-01A-11R-A13Y-07 female black or african american not reported 56 171 Cervix not reported c53.9 dead 2520 78
TCGA-MA-AA41-01A-11R-A38B-07 female white hispanic or latino 47 159 Cervix not reported c53.9 alive NA 33
TCGA-C5-A1M6-01A-11R-A13Y-07 female white not reported 77 165 Cervix not reported c53.9 dead 955 55
TCGA-C5-A7UH-01A-11R-A352-07 female white not hispanic or latino 56 163 Cervix not reported c53.9 alive NA 55
TCGA-EA-A411-01A-11R-A24H-07 female white not hispanic or latino 74 176 Cervix not reported c53.9 alive NA 50
TCGA-FU-A23K-01A-11R-A16R-07 female white not reported 91 165 Cervix not reported c53.9 alive NA 28
TCGA-FU-A23L-01A-11R-A16R-07 female white not reported 56 163 Cervix not reported c53.9 alive NA 60
TCGA-EA-A97N-01A-11R-A38B-07 female white not hispanic or latino 60 160 Cervix not reported c53.9 alive NA 38
TCGA-ZJ-AAXB-01A-11R-A42T-07 female white not hispanic or latino 97 163 Cervix not reported c53.9 alive NA 42
TCGA-C5-A2M1-01A-11R-A18M-07 female white not hispanic or latino 76 168 Cervix not reported c53.9 alive NA 37
TCGA-C5-A1BN-01B-11R-A14Y-07 female white not hispanic or latino 68 163 Cervix not reported c53.9 dead 166 26
TCGA-C5-A8XK-01A-11R-A37O-07 female black or african american not reported NA NA Cervix not reported c53.9 alive NA 30
TCGA-DG-A2KK-01A-11R-A180-07 female not reported not reported 64 157 Cervix not reported c53.9 alive NA 51
TCGA-C5-A1BI-01B-11R-A13Y-07 female white not hispanic or latino 59 157 Cervix not reported c53.9 alive NA 31
TCGA-HM-A6W2-01A-21R-A33Z-07 female black or african american not hispanic or latino 89 160 Cervix not reported c56.9 alive NA 34
TCGA-HM-A6W2-06A-22R-A33Z-07 female black or african american not hispanic or latino 89 160 Cervix not reported c56.9 alive NA 34
TCGA-VS-A9U5-01A-11R-A42T-07 female white not reported 74 162 Cervix not reported c53.9 alive NA 57
TCGA-C5-A1MI-01A-11R-A14Y-07 female white not hispanic or latino 77 NA Cervix not reported c53.9 dead 1083 50
TCGA-C5-A8XI-01A-11R-A37O-07 female black or african american not reported NA NA Cervix not reported c53.9 alive NA 69
TCGA-FU-A57G-01A-11R-A26T-07 female white not hispanic or latino 57 160 Cervix not reported c53.0 alive NA 49
TCGA-EA-A1QT-01A-11R-A14Y-07 female white not hispanic or latino 68 163 Cervix not reported c53.9 alive NA 47
TCGA-VS-A958-01A-11R-A42T-07 female white not reported 61 151 Cervix not reported c53.9 alive NA 46
TCGA-VS-A9U6-01A-11R-A42T-07 female white not reported 66 156 Cervix not reported c53.9 alive NA 52
TCGA-EA-A3HU-01A-11R-A213-07 female white not hispanic or latino 68 162 Cervix not reported c53.9 alive NA 43
TCGA-EK-A2RE-01A-11R-A18M-07 female white not hispanic or latino 54 161 Cervix not reported c53.9 alive NA 26
TCGA-VS-A954-01A-11R-A38B-07 female not reported not reported 58 160 Cervix not reported c53.9 alive NA 67
TCGA-VS-A9UI-01A-11R-A42T-07 female white not reported 70 NA Cervix not reported c53.9 dead 1372 76
TCGA-FU-A5XV-01A-11R-A28H-07 female white not hispanic or latino 69 157 Cervix not reported c53.9 alive NA 32
TCGA-EA-A3QD-01A-32R-A22U-07 female white not hispanic or latino 105 163 Cervix not reported c53.9 alive NA 59
TCGA-EA-A4BA-01A-21R-A26T-07 female white not hispanic or latino 96 162 Cervix not reported c53.9 alive NA 49
TCGA-VS-A952-01A-11R-A38B-07 female white not reported 65 155 Cervix not reported c53.9 alive NA 66
TCGA-EK-A2IR-01A-11R-A180-07 female white not reported 61 160 Cervix not reported c53.9 alive NA 48
TCGA-C5-A1ME-01A-11R-A13Y-07 female white not hispanic or latino 69 165 Cervix not reported c53.9 alive NA 40
TCGA-VS-A9UY-01A-11R-A42T-07 female not reported not reported 46 163 Cervix not reported c53.9 dead 555 29
TCGA-EA-A6QX-01A-12R-A33Z-07 female asian not hispanic or latino 49 154 Cervix not reported c53.9 alive NA 49
TCGA-C5-A1M9-01A-11R-A13Y-07 female white not hispanic or latino 49 155 Cervix not reported c53.9 dead 1065 46
TCGA-EA-A3QE-01A-21R-A21T-07 female white not hispanic or latino 73 154 Cervix not reported c53.9 alive NA 45
TCGA-ZJ-AB0I-01A-11R-A42T-07 female white not hispanic or latino 78 173 Cervix not reported c53.9 alive NA 25
TCGA-VS-A9V0-01A-11R-A42T-07 female not reported not reported 76 158 Cervix not reported c53.9 alive NA 58
TCGA-VS-A9V1-01A-11R-A42T-07 female white not reported 45 155 Cervix not reported c53.9 dead 157 46
TCGA-VS-A9UT-01A-11R-A42T-07 female asian not reported 42 144 Cervix not reported c53.9 alive NA 72
TCGA-EK-A2RC-01A-11R-A18M-07 female not reported not reported 72 170 Cervix not reported c53.9 alive NA 33
TCGA-EK-A2RK-01A-11R-A18M-07 female white not hispanic or latino 101 165 Cervix not reported c53.9 alive NA 67
TCGA-JX-A5QV-01A-22R-A28H-07 female white not hispanic or latino 61 165 Cervix not reported c53.9 alive NA 37
TCGA-EK-A2RA-01A-11R-A18M-07 female not reported hispanic or latino 72 160 Cervix not reported c53.9 alive NA 74
TCGA-MA-AA3X-01A-22R-A42S-07 female black or african american not hispanic or latino 73 170 Cervix not reported c53.9 alive NA 50
TCGA-VS-A9UR-01A-11R-A42T-07 female white not reported 64 161 Cervix not reported c53.9 alive NA 53
TCGA-C5-A7X5-01A-11R-A36F-07 female black or african american not hispanic or latino 59 163 Cervix not reported c53.9 dead 414 72
TCGA-ZJ-AAXD-01A-21R-A42T-07 female not reported not reported NA NA Cervix not reported c53.9 alive NA 35
TCGA-VS-A8EC-01A-11R-A36F-07 female white not reported 46 154 Cervix not reported c53.9 alive NA 55
TCGA-VS-A8EG-01A-11R-A36F-07 female not reported not reported 66 160 Cervix not reported c53.9 alive NA 36
TCGA-Q1-A73S-01A-11R-A33Z-07 female white not hispanic or latino 68 160 Cervix not reported c53.9 alive NA 33
TCGA-ZJ-A8QQ-01A-11R-A37O-07 female white not hispanic or latino 71 158 Cervix not reported c53.9 alive NA 24
TCGA-DS-A5RQ-01A-11R-A28H-07 female white not hispanic or latino 61 148 Cervix not reported c53.9 alive NA 80
TCGA-ZJ-AAX8-01A-11R-A42T-07 female not reported not reported NA NA Cervix not reported c53.9 alive NA 58
TCGA-EK-A2RN-01A-12R-A213-07 female white not hispanic or latino 68 176 Cervix not reported c53.9 alive NA 45
TCGA-C5-A1MK-01A-11R-A14Y-07 female white not hispanic or latino 63 155 Cervix not reported c53.9 dead 74 79
TCGA-FU-A3TX-01A-11R-A22U-07 female not reported not reported 67 NA Cervix not reported c53.9 alive NA 78
TCGA-IR-A3LK-01A-12R-A213-07 female white not reported 96 165 Cervix not reported c53.9 dead 908 69
TCGA-FU-A3EO-01A-11R-A213-07 female white not hispanic or latino 64 165 Cervix not reported c53.9 alive NA 55
TCGA-C5-A2LX-01A-11R-A18M-07 female white not hispanic or latino 65 165 Cervix not reported c53.9 alive NA 54
TCGA-DS-A1O9-01A-11R-A14Y-07 female white not hispanic or latino 32 132 Cervix not reported c53.9 dead 266 75
TCGA-C5-A7CL-01A-11R-A32P-07 female white not reported 103 163 Cervix not reported c53.9 dead 471 48
TCGA-JW-A5VK-01A-11R-A28H-07 female black or african american not hispanic or latino 68 158 Cervix not reported c53.9 alive NA 43
TCGA-MA-AA3Z-01A-11R-A38B-07 female white hispanic or latino 84 160 Cervix not reported c53.9 alive NA 43
TCGA-C5-A3HE-01A-21R-A22U-07 female white not hispanic or latino NA NA Cervix not reported c53.9 alive NA 44
TCGA-RA-A741-01A-11R-A33Z-07 female white not hispanic or latino 86 165 Cervix not reported c53.9 alive NA 34
TCGA-C5-A8YR-01A-12R-A37O-07 female white not hispanic or latino 80 NA Cervix not reported c53.9 dead 837 56
TCGA-C5-A2LZ-01A-11R-A213-07 female white not hispanic or latino 85 163 Cervix not reported c53.9 dead 3046 65
TCGA-EK-A2PI-01A-11R-A18M-07 female white not reported 53 162 Cervix not reported c53.9 alive NA 44
TCGA-EK-A2RM-01A-21R-A18M-07 female white not hispanic or latino 105 167 Cervix not reported c53.9 alive NA 40
TCGA-DS-A7WI-01A-12R-A352-07 female white not hispanic or latino 57 165 Cervix not reported c53.9 dead 252 43
TCGA-VS-A8QH-01A-11R-A37O-07 female white not reported 73 159 Cervix not reported c53.9 dead 1210 76
TCGA-UC-A7PI-01A-11R-A42S-07 female white not hispanic or latino 64 NA Cervix not reported c53.0 alive NA 44
TCGA-Q1-A6DV-01A-11R-A32P-07 female asian not hispanic or latino 60 152 Cervix not reported c53.0 alive NA 36
TCGA-EK-A2H0-01A-11R-A180-07 female white not reported 88 156 Cervix not reported c53.9 alive NA 24
TCGA-C5-A907-01A-11R-A37O-07 female white not hispanic or latino 95 163 Cervix not reported c53.9 alive NA 47
TCGA-EK-A2RO-01A-11R-A18M-07 female american indian or alaska native hispanic or latino 77 168 Cervix not reported c53.9 alive NA 59
TCGA-C5-A905-01A-11R-A37O-07 female black or african american not hispanic or latino 73 NA Cervix not reported c53.9 alive NA 37
TCGA-VS-A9UV-01A-11R-A42T-07 female not reported not reported 31 152 Cervix not reported c53.9 dead 104 74
TCGA-MY-A913-01A-11R-A37O-07 female black or african american hispanic or latino 76 163 Cervix not reported c53.9 alive NA 28
TCGA-VS-A9UB-01A-22R-A42T-07 female not reported not reported 79 166 Cervix not reported c53.9 alive NA 54
TCGA-VS-A957-01A-11R-A42T-07 female white not reported 91 156 Cervix not reported c53.9 alive NA 64
TCGA-VS-A8QC-01A-11R-A37O-07 female white not reported 90 152 Cervix not reported c53.9 dead 350 51
TCGA-EK-A3GM-01A-11R-A213-07 female white hispanic or latino 83 150 Cervix not reported c53.9 alive NA 65
TCGA-VS-A9UC-01A-11R-A42T-07 female not reported not reported 76 153 Cervix not reported c53.9 alive NA 32
TCGA-EK-A2RJ-01A-11R-A18M-07 female white not hispanic or latino 85 162 Cervix not reported c53.9 alive NA 51
TCGA-C5-A7UI-01A-11R-A36F-07 female black or african american not hispanic or latino 86 NA Cervix not reported c53.9 dead 2888 42
TCGA-C5-A8YT-01A-11R-A37O-07 female white not hispanic or latino NA NA Cervix not reported c53.9 dead 633 36
TCGA-MY-A5BD-01A-11R-A26T-07 female white hispanic or latino 91 157 Cervix not reported c53.9 alive NA 62
TCGA-EA-A44S-01A-12R-A26T-07 female white not hispanic or latino 83 182 Cervix not reported c53.9 alive NA 31
TCGA-DS-A7WF-01A-11R-A352-07 female not reported hispanic or latino 63 160 Cervix not reported c53.9 dead 492 41
TCGA-EK-A3GK-01A-11R-A213-07 female white not hispanic or latino 73 165 Cervix not reported c53.9 alive NA 33
TCGA-Q1-A73O-01A-11R-A32P-07 female not reported hispanic or latino 76 152 Cervix not reported c53.9 alive NA 37
TCGA-JW-A5VL-01A-11R-A28H-07 female american indian or alaska native hispanic or latino 71 160 Cervix not reported c53.9 alive NA 37
TCGA-C5-A7CM-01A-11R-A33Z-07 female white hispanic or latino 75 168 Cervix not reported c53.9 alive NA 35
TCGA-VS-A9V5-01A-11R-A42T-07 female white not reported 98 157 Cervix not reported c53.9 dead 494 50
TCGA-EK-A2R8-01A-21R-A18M-07 female white not hispanic or latino 75 170 Cervix not reported c53.9 alive NA 48
TCGA-FU-A2QG-01A-11R-A18M-07 female white not hispanic or latino 138 170 Cervix not reported c53.9 alive NA 29
TCGA-C5-A7CH-01A-11R-A33Z-07 female white not hispanic or latino 104 161 Cervix not reported c53.9 alive NA 43
TCGA-EK-A2R7-01A-11R-A18M-07 female white not hispanic or latino 75 165 Cervix not reported c53.9 alive NA 45
TCGA-EK-A2GZ-01A-11R-A180-07 female black or african american not hispanic or latino 64 160 Cervix not reported c53.9 alive NA 64
TCGA-Q1-A73R-01A-11R-A33Z-07 female white not reported 95 155 Cervix not reported c53.9 alive NA 45
TCGA-VS-A8EK-01A-12R-A37O-07 female white not reported 50 153 Cervix not reported c53.9 dead 829 65
TCGA-C5-A7UE-01A-11R-A33Z-07 female white not reported 63 160 Cervix not reported c53.9 alive NA 45
TCGA-MA-AA42-01A-12R-A38B-07 female white hispanic or latino 63 140 Cervix not reported c53.9 alive NA 75
TCGA-VS-A953-01A-11R-A38B-07 female not reported not reported 47 155 Cervix not reported c53.9 dead 477 63
TCGA-FU-A3NI-01A-11R-A21T-07 female white not hispanic or latino 57 162 Cervix not reported c53.9 dead 638 45
TCGA-DS-A7WH-01A-22R-A352-07 female white not hispanic or latino 50 168 Cervix not reported c53.9 alive NA 34
TCGA-ZJ-A8QR-01A-11R-A37O-07 female native hawaiian or other pacific islander not hispanic or latino 58 NA Cervix not reported c53.9 dead 582 38
TCGA-ZJ-AAXU-01A-11R-A42T-07 female white not hispanic or latino 70 165 Cervix not reported c53.9 alive NA 51
TCGA-C5-A8YQ-01A-11R-A37O-07 female white not hispanic or latino 70 165 Cervix not reported c53.9 dead 715 79
TCGA-EK-A3GJ-01A-21R-A213-07 female native hawaiian or other pacific islander not reported 96 171 Cervix not reported c53.9 alive NA 51
TCGA-C5-A7XC-01A-11R-A38B-07 female white not hispanic or latino 53 NA Cervix not reported c53.9 alive NA 26
TCGA-DS-A0VL-01A-21R-A10U-07 female white not reported 86 170 Cervix not reported c53.9 alive 1692 25
TCGA-VS-A8EL-01A-11R-A37O-07 female black or african american not reported 78 166 Cervix not reported c53.9 alive NA 38
TCGA-LP-A4AU-01A-32R-A32Y-07 female asian not hispanic or latino 49 153 Cervix not reported c53.9 alive NA 35
TCGA-HG-A2PA-01A-11R-A213-07 female white not hispanic or latino 95 164 Cervix not reported c53.9 dead 773 38
TCGA-DS-A1OC-01A-11R-A14Y-07 female white hispanic or latino 78 140 Cervix not reported c53.9 alive NA 47
TCGA-C5-A2LY-01A-31R-A18M-07 female white not hispanic or latino 88 160 Cervix not reported c53.9 alive NA 30
TCGA-C5-A1BQ-01C-11R-A213-07 female white not hispanic or latino 69 147 Cervix not reported c53.9 dead 604 65
TCGA-IR-A3LB-01A-11R-A24H-07 female white not hispanic or latino 94 168 Cervix not reported c53.9 dead 2032 53
TCGA-DG-A2KM-01A-11R-A180-07 female not reported not reported NA 169 Cervix not reported c53.9 alive NA 46
TCGA-C5-A8XJ-01A-11R-A37O-07 female white not hispanic or latino 114 160 Cervix not reported c53.9 alive NA 74
TCGA-ZJ-AAXA-01A-11R-A42T-07 female white not hispanic or latino 78 155 Cervix not reported c53.9 alive NA 64
TCGA-C5-A1M7-01A-11R-A13Y-07 female white not hispanic or latino 69 165 Cervix not reported c53.9 alive NA 37
TCGA-C5-A901-01A-11R-A37O-07 female white not reported 54 166 Cervix not reported c53.9 alive NA 44
TCGA-EX-A449-01A-11R-A32Y-07 female white not hispanic or latino 107 168 Cervix not reported c53.9 alive NA 42
TCGA-ZJ-A8QO-01A-11R-A37O-07 female not reported not reported NA NA Cervix not reported c53.9 alive NA 73
TCGA-C5-A1MQ-01A-11R-A14Y-07 female white not hispanic or latino 116 175 Cervix not reported c53.9 alive NA 35
TCGA-DS-A1OD-01A-11R-A14Y-07 female white not hispanic or latino 89 155 Cervix not reported c53.9 alive NA 49
TCGA-EA-A5FO-01A-21R-A28H-07 female white not hispanic or latino 58 162 Cervix not reported c53.9 alive NA 59
TCGA-DS-A0VM-01A-11R-A10U-07 female white not hispanic or latino 69 163 Cervix not reported c53.9 alive NA 51
TCGA-MA-AA43-01A-11R-A42T-07 female white hispanic or latino 72 152 Cervix not reported c53.9 alive NA 48
TCGA-VS-A9UM-01A-11R-A42T-07 female black or african american not reported 75 160 Cervix not reported c53.9 dead 829 39
TCGA-JW-A5VJ-01A-11R-A28H-07 female american indian or alaska native hispanic or latino 57 155 Cervix not reported c53.9 alive NA 56
TCGA-VS-A9UP-01A-11R-A42T-07 female not reported not reported 68 155 Cervix not reported c53.9 alive NA 43
TCGA-ZJ-AB0H-01A-11R-A42T-07 female not reported not reported NA NA Cervix not reported c53.9 alive NA 48
TCGA-HM-A3JJ-01A-21R-A21T-07 female black or african american not hispanic or latino 72 173 Cervix not reported c53.9 dead 659 40
TCGA-LP-A4AV-01A-11R-A32Y-07 female asian not hispanic or latino 42 153 Cervix not reported c53.9 alive NA 63
TCGA-IR-A3LH-01A-21R-A213-07 female black or african american not reported 74 154 Cervix not reported c53.9 alive NA 49
TCGA-VS-A959-01A-11R-A42T-07 female not reported not reported 47 145 Cervix not reported c53.9 alive NA 76
TCGA-C5-A7CG-01A-11R-A32P-07 female white not hispanic or latino 94 169 Cervix not reported c53.9 alive NA 55
TCGA-Q1-A5R2-01A-11R-A28H-07 female white not hispanic or latino 76 160 Cervix not reported c53.9 alive NA 64
TCGA-BI-A20A-01A-11R-A14Y-07 female white not hispanic or latino 59 167 Cervix not reported c53.9 alive NA 49
TCGA-EX-A3L1-01A-11R-A32Y-07 female white not hispanic or latino 57 160 Cervix not reported c53.9 alive NA 32
TCGA-EK-A3GN-01A-11R-A213-07 female white not hispanic or latino 83 160 Cervix not reported c53.9 alive NA 47
TCGA-MY-A5BE-01A-21R-A26T-07 female black or african american not hispanic or latino 84 157 Cervix not reported c53.9 alive NA 42
TCGA-DS-A0VN-01A-21R-A10U-07 female white not hispanic or latino 81 165 Cervix not reported c53.9 alive NA 47
TCGA-C5-A7CJ-01A-11R-A32P-07 female white not hispanic or latino 60 163 Cervix not reported c53.9 dead 3097 42
TCGA-EK-A2RB-01A-11R-A18M-07 female white not hispanic or latino 105 175 Cervix not reported c53.9 alive NA 48
TCGA-Q1-A5R1-01A-11R-A28H-07 female white not hispanic or latino 92 183 Cervix not reported c53.9 alive NA 32
TCGA-JW-A69B-01A-11R-A32P-07 female white hispanic or latino 69 155 Cervix not reported c53.9 alive NA 44
TCGA-C5-A2LT-01A-11R-A18M-07 female white not hispanic or latino 59 163 Cervix not reported c53.9 alive NA 38
TCGA-MA-AA3W-01A-11R-A38B-07 female white hispanic or latino 84 155 Cervix not reported c53.9 alive NA 54
TCGA-C5-A7CO-01A-11R-A352-07 female white not hispanic or latino 98 158 Cervix not reported c53.0 alive NA 68
TCGA-XS-A8TJ-01A-11R-A36F-07 female black or african american hispanic or latino 51 146 Cervix not reported c53.9 alive NA 41

Benchmarking OTTER networks

The accuracy of OTTER cancer networks were benchmarked for their accuracy to predict ChIP-seq binding in comparison to other methods. The ground truth data can be found here.

*refers to a modified input PPI and motif networks. For more details, please check this page.